SURABAYA, Nov 13 — Two students from the Department of Biosciences, Faculty of Science, Universiti Teknologi Malaysia (UTM) — Abellyna Abraham and Alicia Lee Jia Wong, students supervised by Dr Nur Izzati Mohd Noh and co-supervised by Chm. Anthony Nyangson Anak Steven —participated in a research internship at Research Center for Bio-Molecule Engineering (BIOME), Universitas Airlangga (UNAIR) from 1 to 31 October 2025. Their work centered on whole genome sequencing, offering an immersive experience that enriched their understanding of advanced molecular biology techniques, bioinformatics tools, and collaborative scientific research within a dynamic and interdisciplinary environment.
During a month-long research internship at BIOME UNAIR, Abellyna and Alicia were deeply engaged in the comprehensive workflow of whole genome sequencing, with a particular focus on cyanobacterial genomic deoxyribonucleic acid (DNA). They began by preparing high-quality DNA samples, employing meticulous extraction techniques to ensure purity and integrity suitable for downstream applications. Quality control was a critical step, where they utilized spectrophotometry and gel electrophoresis to assess DNA concentration and fragment size distribution. Under expert supervision, Wahyu Adriansyah, they were assisted in DNA library preparation using Rapid Barcoding Kit 24 V14 (Oxford Nanopore Technology), also participated in sequencing runs with PromethION 24, observing the nuances of machine calibration and data acquisition. Post-sequencing, they conducted preliminary bioinformatics analyses, including read trimming, alignment to reference genomes, and de novo assembly, using tools such as FastQC, Flye, and SPAdes. This hands-on experience not only sharpened their technical skills but also deepened their understanding of microbial genomics, especially its relevance to environmental monitoring, industrial biotechnology, and sustainable innovation. The mentorship they received from BIOME UNAIR’s researchers, Dr. Almando Geraldi and his team was instrumental in helping them navigate the complexities of high-throughput data interpretation and appreciate the interdisciplinary nature of genomic science.
Beyond their laboratory responsibilities, Abellyna and Alicia actively participated in the BiomeFert community service program organized by BIOME UNAIR on 18 October 2025 in Banyuwangi. BiomeFert is a sustainability-driven initiative that promotes the use of biofertilizers to enhance soil health and reduce chemical dependency in agriculture. As volunteers, they contributed to the preparation and distribution of BiomeFert products, ensuring that formulations were packaged and delivered efficiently to local farming communities. They engaged directly with farmers, explaining the scientific principles behind biofertilizers, their environmental benefits, and practical application methods tailored to local crop systems. Our role also involved supporting event logistics, including setting up demonstration booths, managing participant flow, and documenting the outreach activities for post-event reporting. This experience offered us a meaningful perspective on how scientific research can be translated into tangible societal benefits. It reinforced our belief in the importance of community-centered innovation and highlighted the role of scientists not only as researchers but also as advocates for sustainable development and inclusive knowledge sharing.
Besides that, Abellyna Abraham and Alicia Lee actively engaged in cultural and social activities that enriched their internship experience. One memorable evening was spent watching the sunset at Teluk Pang Pang with fellow UNAIR students, where informal conversations and shared laughter fostered deeper connections and strengthened their professional network. They were also accompanied by Ganis, Dr. Almando Geraldi’s Undergraduate student on a meaningful visit to Tugu Pahlawan and the Museum Sepuluh Nopember, where they explored Indonesia’s rich historical legacy and gained insights into the nation’s spirit of resilience and patriotism. Another highlight was their visit to a local dragonfruit plantation, where they interacted with farmers and learned about sustainable agricultural practices and community-based food production. These experiences not only broadened their cultural understanding but also reinforced the importance of collaboration, empathy, and sustainability in scientific and regional development.
The research internship at BIOME UNAIR was a profoundly transformative experience that enriched both our scientific capabilities and our sense of purpose as emerging researchers. Immersing themselves in the intricacies of whole genome sequencing allowed them to sharpen their technical competencies—from molecular protocols to bioinformatics analysis—while cultivating a deeper appreciation for the rigor and creativity required in genomic research. Equally meaningful was their involvement in the BiomeFert community outreach in Banyuwangi, where they witnessed firsthand how scientific innovation can empower local communities and promote sustainable agricultural practices. This dual exposure to cutting-edge research and grassroots engagement reaffirmed their commitment to socially responsible science—science that not only advances knowledge but also uplifts lives. They extend their heartfelt gratitude to the BIOME UNAIR team for their generous mentorship, and to the Banyuwangi community for their warmth, curiosity, and collaboration during the BiomeFert initiative.
Prepared by Abellyna Abraham
